Report on the Second International Workshop on the Evaluation on Collaborative Information Seeking and Retrieval (ECol'2017 @ CHIIR)

The 2nd workshop on the evaluation of collaborative information retrieval and seeking (ECol) was held in conjunction with the ACM SIGIR Conference on Human Information Interaction & Retrieval (CHIIR) in Oslo, Norway. The workshop focused on discussing the challenges and difficulties of researching and studying collaborative information retrieval and seeking (CIS/CIR). After an introductory and scene setting overview of developments in CIR/CIS, participants were challenged with devising a range of possible CIR/CIS tasks that could be used for evaluation purposes. Through the brainstorming and discussions, valuable insights regarding the evaluation of CIR/CIS tasks become apparent ? for particular tasks efficiency and/or effectiveness is most important, however for the majority of tasks the success and quality of outcomes along with knowledge sharing and sense-making were most important ? of which these latter attributes are much more difficult to measure and evaluate. Thus the major challenge for CIR/CIS research is to develop methods, measures and methodologies to evaluate these high order attributes

Key-specific Shrinkage Techniques for Harmonic Models

Statistical modeling of music is rapidly gaining acceptance as viable approach to a host of Music Information Retrieval related tasks, from transcription to ad hoc retrieval. As music may be viewed as an evolving pattern of notes over time, models which capture some statistical notion of sequence are preferred. The focus of this paper is on Markov models for ad hoc retrieval. In particular, we use Harmonic Models as our baseline retrieval system and explain how they may be improved by better shrinkage procedures to improve parameter estimation

Container Color and Compost Substrate Affect Root Zone Temperature and Growth of “Green Giant” Arborvitae

Container-grown nursery crops are commonly exposed to root zone stress due to inadequate moisture and supraoptimal root zone temperature (RZT). Compost substrates can improve water and nutrient retention but plant responses can vary due to physical and chemical properties. Dark color containers absorb solar radiation through the container side wall leading to excessive heat buildup in the substrate, yet white containers can reduce RZT. Compost substrates and container color were examined for effects on RZT and growth of “Green Giant” arborvitae (Thuja standishii × plicata “Green Giant”). “Green Giant” arborvitae were transplanted into white or black containers (11.3 L) filled with a pine bark substrate (PB) or PB mixed with compost (C) at two different proportions [PB:C (9:1) and PB:C (7:3)]. White containers reduced maximum RZT by up to 7 °C and RZT remained above 38 °C for only 3% of the time compared to 21% of the time in black containers. Shoot growth increased over 50% in white containers compared to black containers. Compost increased substrate volumetric water content (VWC), increased shoot growth by up to 24%, and reduced total irrigation volume by up to 40%. Utilizing white containers for minimizing RZT and compost-amended substrates to maintain adequate VWC can improve root and shoot growth and overall crop quality while reducing nursery production inputs

Container Type and Substrate Affect Root Zone Temperature and Growth of ‘Green Giant’ Arborvitae

Root zone temperature (RZT) in nursery containers commonly exceeds ambient temperature during the growing season, negatively impacting crop growth and quality. Black nursery containers absorb radiant heat resulting in excessive RZT, yet other types of containers and different substrates can moderate RZT. We conducted studies in Tennessee and Alabama to evaluate the effects of container type and substrate on RZT and growth of ‘Green Giant’ arborvitae (Thuja standishii × plicata ‘Green Giant’). Trade gallon arborvitae were transplanted into black, white, or air pruning containers filled with pine bark (PB) or 4 PB: 1 peatmoss (v:v) (PB:PM). Plants grown in PB:PM were larger and had greater shoot and root biomass than plants grown in PB, likely due to increased volumetric water content. Plant growth response to container type varied by location, but white containers with PB:PM produced larger plants and greater biomass compared with the other container types. Root zone temperature was greatest in black containers and remained above 38 °C and 46 °C for 15% and 17% longer than white and air pruning containers, respectively. Utilizing light color containers in combination with substrates containing peatmoss can reduce RZT and increase substrate moisture content thus improving crop growth and quality

Report of ECol Workshop Report on the First International Workshop on the Evaluation on Collaborative Information Seeking and Retrieval (ECol'2015)

Report of the ECol Workshop @ CIKM 2015The workshop on the evaluation of collaborative information retrieval and seeking (ECol) was held in conjunction with the 24 th Conference on Information and Knowledge Management (CIKM) in Melbourne, Australia. The workshop featured three main elements. First, a keynote on the main dimensions, challenges, and opportunities in collaborative information retrieval and seeking by Chirag Shah. Second, an oral presentation session in which four papers were presented. Third, a discussion based on three seed research questions: (1) In what ways is collaborative search evaluation more challenging than individual interactive information retrieval (IIIR) evaluation? (2) Would it be possible and/or useful to standardise experimental designs and data for collaborative search evaluation? and (3) For evaluating collaborative search, can we leverage ideas from other tasks such as diversified search, subtopic mining and/or e-discovery? The discussion was intense and raised many points and issues, leading to the proposition that a new evaluation track focused on collaborative information retrieval/seeking tasks, would be worthwhile

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN